Welcome to the CoMutDB database !

ICGC

Cancer List:
 Select the cancers from which the mutation-expression associations were inferred. You can select up to 5 cancers by clicking an item in the list and repeat the process. Cancers can also be selected by clicking on the organ icons on the human figure on the left. The selected cancers appear in the Selected cancers area.



Selected cancer Types:

  • Acute Lymphoblastic Leukemia - TARGET; US (ALL-US)×
  • Acute Myeloid Leukemia - TARGET; US (AML-US)×
  • Bladder Cancer - CN (BLCA-CN)×
  • Bladder Urothelial Cancer - TCGA; US (BLCA-US)×
  • Soft Tissue cancer - Ewing sarcoma - FR (BOCA-FR)×
  • Bone Cancer - UK (BOCA-UK)×
  • B-Cell Prolymphocytic Leukemia - FR (BPLL-FR)×
  • Breast ER+ and HER2- Cancer - EU/UK (BRCA-EU)×
  • Breast Cancer - FR (BRCA-FR)×
  • Breast Cancer - Very young women -KR (BRCA-KR)×
  • Breast Triple Negative/Lobular Cancer - UK (BRCA-UK)×
  • Breast Cancer - TCGA; US (BRCA-US)×
  • Biliary Tract Cancer - JP (BTCA-JP)×
  • Biliary Tract Cancer - SG (BTCA-SG)×
  • Cervical Squamous Cell Carcinoma - TCGA; US (CESC-US)×
  • Chronic Lymphocytic Leukemia - ES (CLLE-ES)×
  • Chronic Myeloid Disorders - UK (CMDI-UK)×
  • Colon Adenocarcinoma - TCGA; US (COAD-US)×
  • Colorectal Cancer - CN (COCA-CN)×
  • Lymphoid Neoplasm Diffuse Large B-cell Lymphoma - TCGA; US (DLBC-US)×
  • Early Onset Prostate Cancer - DE (EOPC-DE)×
  • Esophageal Adenocarcinoma - UK (ESAD-UK)×
  • Esophageal Cancer - CN (ESCA-CN)×
  • Gastric Cancer - CN (GACA-CN)×
  • Gastric Cancer - JP (GACA-JP)×
  • Brain Glioblastoma Multiforme - TCGA; US (GBM-US)×
  • Head and Neck Squamous Cell Carcinoma - TCGA; US (HNSC-US)×
  • Kidney Chromophobe - TCGA; US (KICH-US)×
  • Kidney Renal Clear Cell Carcinoma - TCGA; US (KIRC-US)×
  • Kidney Renal Papillary Cell Carcinoma - TCGA; US (KIRP-US)×
  • Leukemia - CN (LAML-CN)×
  • Acute Myeloid Leukemia - KR (LAML-KR)×
  • Acute Myeloid Leukemia - TCGA; US (LAML-US)×
  • Brain Lower Grade Glioma - TCGA; US (LGG-US)×
  • Benign Liver Tumour - FR (LIAD-FR)×
  • Liver Cancer - CN (LICA-CN)×
  • Liver Cancer - FR (LICA-FR)×
  • Liver Hepatocellular carcinoma - TCGA; US (LIHC-US)×
  • Liver Cancer - Hepatocellular macronodules -FR (LIHM-FR)×
  • Liver Cancer - NCC; JP (LINC-JP)×
  • Liver Cancer - RIKEN; JP (LIRI-JP)×
  • Soft tissue cancer - Leiomyosarcoma - FR (LMS-FR)×
  • Lung Adenocarcinoma - TCGA; US (LUAD-US)×
  • Lung Cancer - CN (LUSC-CN)×
  • Lung Cancer - KR (LUSC-KR)×
  • Lung Squamous Cell Carcinoma - TCGA; US (LUSC-US)×
  • Malignant Lymphoma - DE (MALY-DE)×
  • Skin Cancer - AU (MELA-AU)×
  • Nasopharyngeal cancer - CN (NACA-CN)×
  • Neuroblastoma - TARGET; US (NBL-US)×
  • Blood Cancer - T-cell and NK-cell lymphoma - SG (NKTL-SG)×
  • Oral Cancer - IN (ORCA-IN)×
  • Ovarian Cancer - AU (OV-AU)×
  • Ovarian Serous Cystadenocarcinoma - TCGA; US (OV-US)×
  • Pancreatic Cancer - TCGA; US (PAAD-US)×
  • Pancreatic Cancer - AU (PACA-AU)×
  • Pancreatic Cancer - CA (PACA-CA)×
  • Pancreatic Cancer Endocrine neoplasms - AU (PAEN-AU)×
  • Pancreatic Endocrine Neoplasms - IT (PAEN-IT)×
  • Pediatric Brain Cancer - DE (PBCA-DE)×
  • Pediatric Brain Tumor - Multiple subtypes - US (PBCA-US)×
  • Pediatric Medulloblastoma - CA (PEME-CA)×
  • Prostate Adenocarcinoma - CA (PRAD-CA)×
  • Prostate Cancer - CN (PRAD-CN)×
  • Prostate Cancer - Adenocarcinoma - FR (PRAD-FR)×
  • Prostate Adenocarcinoma - UK (PRAD-UK)×
  • Prostate Adenocarcinoma - TCGA; US (PRAD-US)×
  • Rectum Adenocarcinoma - TCGA; US (READ-US)×
  • Renal Cancer - CN (RECA-CN)×
  • Renal Cell Cancer - EU/FR (RECA-EU)×
  • Rhabdoid Tumors - TARGET; US (RT-US)×
  • Sarcoma - TCGA; US (SARC-US)×
  • Skin Adenocarcinoma - BR (SKCA-BR)×
  • Skin Cutaneous melanoma - TCGA; US (SKCM-US)×
  • Gastric Adenocarcinoma - TCGA; US (STAD-US)×
  • Thyroid Cancer - CN (THCA-CN)×
  • Thyroid Cancer - SA (THCA-SA)×
  • Head and Neck Thyroid Carcinoma - TCGA; US (THCA-US)×
  • Uterine Corpus Endometrial Carcinoma- TCGA; US (UCEC-US)×
  • Uterine Cancer - Carcinosarcoma - FR (UTCA-FR)×
  • Wilms Tumor - TARGET; US (WT-US)×

Paste genes:

OR Upload a file about genes:
supporting csv or txt file!

Example
 

OR Select gene set by pathway:
An user can select gene set from a predefined pathways

Survival:
Whether to conduct survival analysis

 Yes     

Phenotype:
Whether to output co-mutation analysis based on race, age, or gender.

 Age       Gender     

Single Mutation Frequency:
Whether to output single mutation frequencies

 Yes     

Mutation Type:
Silent: mutations that do not alter amino acid; Nonsilent: mutations that alter amino acid; All: include both silent and nonsilent mutations.

 silent       nonsilent       all

Co-mutation logic:
And: all genes specified in the input must be mutated; Or: only one gene from the specified input needs to be mutated; Synergy: linear model k1x1 + k2x2 + k3x1x2 also used to analysis the association between co-mutation and phenotype.

 And       Or       Synergy

Co-mutation gene limit:
 The upper limit of co-mutated genes.  This number indicates how many genes needs to be mutated simultaneously to be considered co-mutated. The upper limit is set as 4. However, the number of input genes can be greater than 4. For example, if 20 genes are inputted and 4 is selected here, all combination of 4 genes from the 20 genes will be tested.

 2     3     4   

Co-mutation significance
Evaluate statistical significance of co-mutation via biRewire algorithm. Please expect lengthy running time due to intensive computation. The resultant comut_P is included in tables.

 Yes