MEME version 4 
 
ALPHABET= ACGT 
 
strands: + - 
 
Background letter frequencies 
A 0.25 C 0.25 G 0.25 T 0.25 
 
MOTIF EGR1:EGR1:SMILE-seq
letter-probability matrix: alength = 4  w = 13 
0.140000 0.230000 0.220000 0.410000
0.180000 0.080000 0.720000 0.020000
0.130000 0.710000 0.030000 0.130000
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 0.350000 0.650000
0.080000 0.000000 0.920000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.080000 0.690000 0.010000 0.220000
0.040000 0.010000 0.940000 0.010000
0.070000 0.090000 0.520000 0.320000
0.280000 0.190000 0.320000 0.210000
0.230000 0.230000 0.320000 0.220000

MOTIF GATA-3:GATA-3:SMILE-seq
letter-probability matrix: alength = 4  w = 6 
0.190000 0.360000 0.270000 0.180000
0.150000 0.110000 0.060000 0.680000
0.170000 0.000000 0.000000 0.830000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 1.000000 0.000000 0.000000

MOTIF GR:GR:SMILE-seq
letter-probability matrix: alength = 4  w = 15 
0.370000 0.080000 0.370000 0.180000
0.090000 0.020000 0.750000 0.140000
0.250000 0.060000 0.260000 0.430000
0.880000 0.000000 0.040000 0.080000
0.000000 1.000000 0.000000 0.000000
0.610000 0.000000 0.220000 0.170000
0.080000 0.160000 0.170000 0.590000
0.090000 0.270000 0.080000 0.560000
0.220000 0.230000 0.230000 0.320000
0.080000 0.160000 0.030000 0.730000
0.000000 0.000000 1.000000 0.000000
0.030000 0.010000 0.020000 0.940000
0.260000 0.130000 0.170000 0.440000
0.090000 0.730000 0.000000 0.180000
0.080000 0.370000 0.120000 0.430000

MOTIF NFKB1:NFKB1:SMILE-seq
letter-probability matrix: alength = 4  w = 13 
0.280000 0.220000 0.330000 0.170000
0.030000 0.040000 0.910000 0.020000
0.000000 0.000000 0.990000 0.010000
0.020000 0.010000 0.650000 0.320000
0.390000 0.010000 0.480000 0.120000
0.300000 0.310000 0.190000 0.200000
0.170000 0.070000 0.090000 0.670000
0.050000 0.200000 0.140000 0.610000
0.080000 0.520000 0.020000 0.380000
0.170000 0.780000 0.010000 0.040000
0.010000 0.980000 0.000000 0.010000
0.070000 0.830000 0.060000 0.040000
0.150000 0.320000 0.240000 0.290000

MOTIF PPARg_RXRa:PPARg_RXRa:SMILE-seq
letter-probability matrix: alength = 4  w = 15 
0.570000 0.040000 0.090000 0.300000
0.140000 0.270000 0.370000 0.220000
0.120000 0.130000 0.190000 0.560000
0.450000 0.050000 0.450000 0.050000
0.040000 0.020000 0.740000 0.200000
0.130000 0.000000 0.790000 0.080000
0.100000 0.180000 0.260000 0.460000
0.130000 0.510000 0.150000 0.210000
0.890000 0.020000 0.070000 0.020000
0.620000 0.040000 0.120000 0.220000
0.780000 0.030000 0.160000 0.030000
0.020000 0.010000 0.940000 0.030000
0.000000 0.000000 0.860000 0.140000
0.020000 0.030000 0.160000 0.790000
0.070000 0.570000 0.140000 0.220000

MOTIF RARg:RARg:SMILE-seq
letter-probability matrix: alength = 4  w = 15 
0.320000 0.130000 0.350000 0.200000
0.560000 0.110000 0.290000 0.040000
0.020000 0.010000 0.940000 0.030000
0.010000 0.010000 0.850000 0.130000
0.040000 0.100000 0.080000 0.780000
0.030000 0.820000 0.090000 0.060000
0.860000 0.020000 0.100000 0.020000
0.450000 0.220000 0.140000 0.190000
0.440000 0.120000 0.240000 0.200000
0.580000 0.120000 0.250000 0.050000
0.070000 0.020000 0.880000 0.030000
0.010000 0.020000 0.680000 0.290000
0.050000 0.050000 0.280000 0.620000
0.040000 0.590000 0.140000 0.230000
0.660000 0.080000 0.150000 0.110000

MOTIF RFX2:RFX2:SMILE-seq
letter-probability matrix: alength = 4  w = 15 
0.130000 0.290000 0.320000 0.260000
0.060000 0.000000 0.940000 0.000000
0.000000 0.030000 0.010000 0.960000
0.120000 0.120000 0.020000 0.740000
0.260000 0.030000 0.620000 0.090000
0.010000 0.760000 0.030000 0.200000
0.000000 0.740000 0.010000 0.250000
0.790000 0.040000 0.050000 0.120000
0.140000 0.050000 0.080000 0.730000
0.200000 0.010000 0.790000 0.000000
0.080000 0.030000 0.880000 0.010000
0.240000 0.300000 0.080000 0.380000
0.410000 0.050000 0.300000 0.240000
0.730000 0.100000 0.090000 0.080000
0.040000 0.670000 0.040000 0.250000

MOTIF RXRa:RXRa:SMILE-seq
letter-probability matrix: alength = 4  w = 15 
0.280000 0.210000 0.390000 0.120000
0.480000 0.040000 0.460000 0.020000
0.100000 0.050000 0.750000 0.100000
0.040000 0.050000 0.680000 0.230000
0.030000 0.070000 0.180000 0.720000
0.100000 0.510000 0.180000 0.210000
0.860000 0.010000 0.070000 0.060000
0.700000 0.070000 0.160000 0.070000
0.740000 0.020000 0.230000 0.010000
0.080000 0.020000 0.870000 0.030000
0.010000 0.010000 0.770000 0.210000
0.020000 0.020000 0.230000 0.730000
0.040000 0.650000 0.100000 0.210000
0.650000 0.080000 0.220000 0.050000
0.370000 0.280000 0.120000 0.230000

MOTIF SP4:SP4:SMILE-seq
letter-probability matrix: alength = 4  w = 13 
0.360000 0.180000 0.160000 0.300000
0.330000 0.130000 0.410000 0.130000
0.170000 0.010000 0.390000 0.430000
0.190000 0.000000 0.810000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.070000 0.870000 0.000000 0.060000
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 0.470000 0.530000
0.180000 0.020000 0.650000 0.150000
0.180000 0.150000 0.450000 0.220000
0.100000 0.710000 0.020000 0.170000
0.220000 0.360000 0.090000 0.330000

MOTIF TFE3:TFE3:SMILE-seq
letter-probability matrix: alength = 4  w = 8 
0.010000 0.990000 0.000000 0.000000
0.720000 0.060000 0.050000 0.170000
0.000000 0.820000 0.000000 0.180000
0.130000 0.030000 0.840000 0.000000
0.000000 0.000000 0.010000 0.990000
0.000000 0.000000 1.000000 0.000000
0.900000 0.040000 0.040000 0.020000
0.010000 0.560000 0.040000 0.390000

MOTIF ZEB1:ZEB1:SMILE-seq
letter-probability matrix: alength = 4  w = 8 
0.310000 0.150000 0.200000 0.340000
0.000000 0.500000 0.000000 0.500000
1.000000 0.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.050000 0.000000 0.820000 0.130000
0.180000 0.200000 0.260000 0.360000