Predefined RNA binding protein motif sequence files of oRNAment database
Motif[Motif_gene]
TTAATTA[A1CF,HNRNPD]
AAATCAA[A1CF]
CGGACTG[A1CF]
AGATCGG[A1CF]
AATATAA[A1CF]
ATAATTG[A1CF]
TGCATGC[A2BP1,RBFOX2,RBFOX3]
AACCTAA[ANIA04546]
AGACGTA[ANKHD1]
TGTGTGT[ARET,ARETCONSTRUCT,BRUNOL4,BRUNOL5,PAPI]
TGCATGA[ASD1,FOX1]
AGTGTGA[AT1G76460TAIRG,RBM24]
GGAGGGG[B52]
TTATTTT[BOLL,ELAVL1]
TGTGTTA[BOLL]
TTAGTTT[BOLL]
ATTTTTT[BOLL,HNRNPC,HNRNPCL1,SMP067420]
GTGGTGT[BRU3]
TGTGGTG[BRUNOL6]
TACTACG[CADANIAG00004740]
TGTTTGT[CELF1,TVAG129710]
GTCTTGT[CELF1]
TAAATGT[CELF1]
AACTAAG[CG2931,RBM42]
CAACGAA[CG2950]
AGTGTGG[CG7804]
CTTGCGG[CG7903]
GAAATTT[CG17838]
GGGCGTG[CG33714]
ACACACA[CNOT4,HNRNPL,HNRNPLL,SM]
ATATATA[CNOT4,HNRNPD,RBMS3]
GCTCCCG[CNOT4]
AACAGTA[CNOT4]
ACACATA[CNOT4]
GACAGAT[CNOT4]
TTTTTTA[CPEB1]
CTTTTTT[CPEB2,CPEB4,TIAR1,TIAR3]
ATGCACA[CPO,MEC8,SNRPA]
TTGCACA[CSCAFFOLD4000008,SNRPA]
ACAGTTG[DAZ3]
GTTTTTT[DAZ3]
CAAGTTA[DAZ3]
GTTTAAA[DAZ3]
GTTCCGT[DAZ3]
GTTCTAG[DAZ3]
TAGTATA[DAZAP1,MSI1]
ATAGATA[DAZAP1]
TAAGTTA[DAZAP1]
TAGGTAG[DAZAP1]
TTTTTTT[EGW103003671,ELAVL1,GW184451,HNRNPC,HNRNPCL1,PUF60,SXL,TVAG514790]
AGAACAA[EGW109003261]
AGCATGC[EIF2ALPHA]
GTTGGAA[EIF4B]
GCGGGAC[EIF4B]
CGTTGCA[EIF4G2]
GCGAGGG[EIF4G2]
CGCCGTC[EIF4G2]
CCGCGGC[EIF4G2]
TTTGTTT[ELAV,ELAVL1,ZC3H14CONSTRUCT]
TTGGTTT[ELAVL1]
TTTATTT[ELAVL4,FUBP1,RBM15B,TIA1]
TATTATT[ELAVL4]
TTAAGTT[ELAVL4,EXC7]
CAGACAG[ENOX1]
GTGTGTG[ENSDARG00000058818,RBM24,RBM38]
CCAAATT[ENSGALG00000000814]
GTAATTG[ENSGALG00000003765]
GATGATT[ENSGALG00000014267,ENSXETG00000012802]
AAAAAAG[ENSXETG00000007102,NAB2CONSTRUCT]
CAAAAAG[ENSXETG00000018075]
GGGGTGG[ESRP1,RBM25]
GGTGGTG[ESRP1]
GGGGGAA[ESRP1]
TGGGGAT[ESRP2]
AATTTTG[ESTEXTFGENESHHS]
TTTGTGT[ETR1]
GGGTGGG[EWSR1,PUM1]
GTATAGG[EWSR1]
TGGGGTG[EWSR1]
GGCAGGG[EWSR1]
ACGGACA[FMR1]
GGACAAG[FMR1]
TTTAGTT[FNE]
TATGTAT[FUBP1]
TTATTAT[FUBP1,FUBP3]
TGTGTTT[FUBP1]
TATATAT[FUBP3]
GGTGGCG[FUS]
TGCGCGC[FUSCONSTRUCT]
AGAGAAA[FUSIP1]
AGAGAGG[FUSIP1]
GGACGGG[FXR2]
AGGATGA[G3BP2]
TGTTTTT[GW121961CONSTRUC]
TTATAGC[HNRNPA0]
TAGTTAG[HNRNPA0,MSI1]
CATTAGG[HNRNPA0]
TAGCTTA[HNRNPA0]
TTAGGGA[HNRNPA1,HNRNPA1L2,HNRNPA2B1]
GGGGAGG[HNRNPA2B1]
GGGGGTA[HNRNPA2B1]
TAGATAG[HNRNPAB,UNK]
CATTTTT[HNRNPC,RALYL]
CTTTTTA[HNRNPCL1]
ATAGTAA[HNRNPD]
TAATTAA[HNRNPDL]
TAATATT[HNRNPDL]
GGGAGGG[HNRNPF,HNRNPH2,ILF2]
AGGGAGG[HNRNPF]
AGGGGTA[HNRNPF]
GGGGGAG[HNRNPH2,SRSF8]
AGGGGGT[HNRNPH2]
CAGCCCA[HNRNPK]
CACGCAC[HNRNPK]
CGTGTCC[HNRNPK]
CACCACC[HNRNPK]
CCAACCC[HNRNPK]
ACATACA[HNRNPL]
CATTACA[HNRNPL]
ACACAAA[HNRNPL]
ACTAACA[HOW,QKI,SF1CONSTRUCT]
TAGGTTA[HRB27C]
GGTAGGG[HRB87F,HRB98DE]
TATGTAG[HRP1]
CAATACA[IGF2BP1,IGF2BP2]
ACTCCCC[IGF2BP1]
CACATCA[IGF2BP1,IGF2BP2]
ACAAACA[IGF2BP2,IGF2BP3]
CTCCCCA[IGF2BP2]
GGGGTAG[ILF2]
ATGGTGG[ILF2]
TAAAAGG[KHDRBS1]
ATAAAAG[KHDRBS1]
AAATTAA[KHDRBS2]
TTATAAA[KHDRBS2,RBMS2]
CACTAAA[KHDRBS2]
GATAAAA[KHDRBS2]
TATTTAA[KHDRBS3,RBMS3]
AAATAAA[KHDRBS3]
GCGCGCG[KHDRBS3,PPRC1,RBM4B,RBM8A]
CCTTAAA[KHDRBS3]
ATGTATA[KHSRP]
TGTTATT[KHSRP]
TCGCGCG[LARK]
CGGAGAA[LIN28A]
CGGAGGA[LIN28A]
ACATTTT[LMJF180180]
TTACACG[LMJF320750]
AGAACGA[LMJF352550]
AAAAAAA[LMJF354130,PABPC4]
ATACATG[MAL8P140]
ATTACAC[MAL13P135]
AATCTTG[MATR3]
GCTTGCT[MBNL1]
CGCTGCT[MBNL1]
GCTTAGC[MBNL1]
CGCGCAA[MBNL1]
AGCTTGC[MBNL1]
AGTGGAA[MOD]
AGTAGGT[MSI]
AGTAGGG[MSI]
TAGATTT[MSI1]
AGTAGTT[MSICONSTRUCT]
AACCCTA[MUBCONSTRUCT]
GGAGGAA[NCU02404,SRSF1]
CATTCAT[NOVA1]
CATATCA[NOVA1]
CATAAAC[NOVA1]
TCACCAT[NOVA1]
AAAAATA[NUPL2,PABPN1L]
AAAGGAA[NUPL2]
CCGGCAC[NUPL2]
GAGACAA[NUPL2]
ACACCCA[NUPL2]
CAATAAG[NUPL2]
GTTGAAG[NUPL2]
GTTTGGG[ORB2]
GAAAATC[PABP]
AGAAAAA[PABPC1,SART3,TBG97295210,TVAG002940]
ACTAATA[PABPC1,SF1]
ACTAATC[PABPC1]
GAAAACC[PABPC3]
AGAAAAT[PABPC5]
AGAAGAC[PABPN1]
AAAATAT[PABPN1L]
CCGCCCC[PCBP1]
CCGGTCG[PCBP1,PCBP2,PCBP4]
CCCTTCC[PCBP1]
AAGCCCA[PCBP1]
CCTTTCC[PCBP1]
CCCGCCC[PCBP2]
CCTTCCC[PCBP2,PCBP4]
ACCCCAC[PCBP2]
AAGCCCC[PCBP2]
CTTTCCC[PCBP2]
CAATCCT[PCBP4]
ATTCCGA[PF100214]
TTACATG[PF130315]
ACTAAAC[PFF0320C]
TTTTTTG[PFI1435W,RALY,TIA1]
ATTAGCG[PRR3]
ATATAAG[PRR3]
AATGAAC[PRR3]
CTTTTCT[PTBP1]
ACTTTCT[PTBP1]
TCTTTCT[PTBP3]
CTATTCT[PTBP3]
TTTCTCT[PUF60]
TATGAGG[PUF68]
TGTACAG[PUM]
TGTAAAT[PUM]
TGTAATT[PUM]
TGTATAT[PUM1]
TACTAAC[QKI]
ATAATAA[QKR58E1]
TTTCTTT[RALYL]
GATACGA[RBM3]
GCGCGTA[RBM4]
GCTACGT[RBM4]
GCATGCG[RBM4,SFPQ]
GCGCGGG[RBM4]
GGGTCGG[RBM4B]
GCGGGGA[RBM4B]
GCGGTAC[RBM4B]
GAAGGAA[RBM5]
GAAGGAG[RBM5]
CGTCCCT[RBM6]
CCTATCC[RBM6]
GTCCACT[RBM6]
CACCCCC[RBM6]
AATCCAG[RBM6]
TTTAATT[RBM15B]
ACTTTTT[RBM15B]
TTACCGG[RBM22]
CCTCCCC[RBM23]
GCTTAAC[RBM23]
GCTTTTC[RBM24]
GGGGGCA[RBM25]
GGCTGGG[RBM25]
GAGTAGA[RBM28]
TTACTTT[RBM41]
CTACATA[RBM41]
ATACATT[RBM41]
ACGCAAC[RBM45]
ACATTAC[RBM45]
ACTAACG[RBM45]
GACACCC[RBM45]
ACGTACA[RBM45]
ACGACGA[RBM45,RSF1]
GACGACA[RBM45]
AATCAAT[RBM46]
TAATCAA[RBM47]
AAATTAT[RBM47]
TATATAC[RBMS1]
GTATATC[RBMS2]
CTATTTA[RBMS2]
AATATAT[RBMS3]
TTATAAT[RBMS3]
ATACATA[RBMS3]
TATATAG[RBMS3]
ACAACGA[RBP1]
ATCAACG[RBP1LIKE]
TTTGGTT[RBP9]
TATATTA[RC3H1,SHEP]
CCTATGG[RC3H1]
TCTGTGA[RC3H1]
CACATTG[RC3H1]
AGAAGGC[REF2]
AGAGAAG[RNP4F]
AGGGGAA[RO3G00049]
CCATTTT[ROX8]
GCTGGAC[SAMD4A]
ATTAACA[SF1]
ATAACCC[SF1]
AGGAGGA[SF2]
TCAAAAG[SF3B4]
TGTAAGT[SFPQ]
ATAGTGT[SFPQ]
GCCCGGG[SFPQ]
CGGGGCC[SFPQ]
AGTAATG[SFPQ]
GTAGTGT[SFPQ]
ATATTAA[SHEP]
ATATTTA[SHEP,SUP26CONSTRUCT]
GATCAAG[SNRNP70]
CAGCACG[SNRPA]
ATTGCAC[SNRPA]
AGGAGAT[SNRPA]
GTAGGTA[SRP54]
GGAGGAC[SRSF1]
GGAGGAG[SRSF1]
ACGCGCA[SRSF1]
AGCAGCA[SRSF2,SRSF5,SRSF10]
GTTCCAG[SRSF2]
CGCGCAG[SRSF2]
AGGAGAG[SRSF2]
AGCAGTT[SRSF4]
TGCTGCT[SRSF4]
GGTGTGC[SRSF4]
CCCCTCA[SRSF5]
CGCCACC[SRSF5]
GCGCGCC[SRSF5]
CACCGCC[SRSF5]
GCAGCAG[SRSF8]
AAGGAGG[SRSF9]
AGGGAAA[SRSF9]
TAGAACA[SRSF9]
GGAAGGA[SRSF9]
AGGAGCA[SRSF9]
GCATGCA[SRSF10]
AAGCAGC[SRSF11]
AGAGAGA[SRSF11]
CGATACT[STARPAP]
TGTGTGA[SUP12]
GGGGGGG[TAF15]
GCCCCCC[TAF15]
GCGCGCA[TAF15]
AGTATGT[TARDBP]
TGAGTGG[TARDBP]
CATTGTA[TBG97234300]
CTGTTGT[TBG97262300]
CTTTCTT[TBG97294840]
ATTCACA[TBG972111000]
AGTAGAT[TBG9721117950CONS]
AACACGC[THAPSDRAFT1841]
TTTTATT[TIA1]
TTTTTTC[TIA1,U2AF2,U2AF50]
GAAGAAG[TRA2]
AAGAAGA[TRA2A]
CCTGAAA[TRA2A]
TATTTTT[TRNAU1AP]
ATTTTTA[TRNAU1AP]
TTAAATT[TRNAU1AP]
ACCATGA[TVAG267990]
TGTTGTG[UNC75]
TAGTTTA[UNK]
AATTAGC[UNK]
TAGTAAT[UNK]
AACATCA[YB1]
AACAACA[YBX2]
GCAGCGC[ZC3H10]
GTATTAA[ZCRB1]
CGCTTAA[ZCRB1]
TATTTAT[ZFP36]
GGATGTC[ZNF326]
GAATTCC[ZNF326]
GGATCGT[ZNF326]
GGACACG[ZNF326]
TGTTCGT[ZNF638]