Predefined RNA binding protein motif sequence files of oRNAment database

Motif[Motif_gene]
  • TTAATTA[A1CF,HNRNPD]
  • AAATCAA[A1CF]
  • CGGACTG[A1CF]
  • AGATCGG[A1CF]
  • AATATAA[A1CF]
  • ATAATTG[A1CF]
  • TGCATGC[A2BP1,RBFOX2,RBFOX3]
  • AACCTAA[ANIA04546]
  • AGACGTA[ANKHD1]
  • TGTGTGT[ARET,ARETCONSTRUCT,BRUNOL4,BRUNOL5,PAPI]
  • TGCATGA[ASD1,FOX1]
  • AGTGTGA[AT1G76460TAIRG,RBM24]
  • GGAGGGG[B52]
  • TTATTTT[BOLL,ELAVL1]
  • TGTGTTA[BOLL]
  • TTAGTTT[BOLL]
  • ATTTTTT[BOLL,HNRNPC,HNRNPCL1,SMP067420]
  • GTGGTGT[BRU3]
  • TGTGGTG[BRUNOL6]
  • TACTACG[CADANIAG00004740]
  • TGTTTGT[CELF1,TVAG129710]
  • GTCTTGT[CELF1]
  • TAAATGT[CELF1]
  • AACTAAG[CG2931,RBM42]
  • CAACGAA[CG2950]
  • AGTGTGG[CG7804]
  • CTTGCGG[CG7903]
  • GAAATTT[CG17838]
  • GGGCGTG[CG33714]
  • ACACACA[CNOT4,HNRNPL,HNRNPLL,SM]
  • ATATATA[CNOT4,HNRNPD,RBMS3]
  • GCTCCCG[CNOT4]
  • AACAGTA[CNOT4]
  • ACACATA[CNOT4]
  • GACAGAT[CNOT4]
  • TTTTTTA[CPEB1]
  • CTTTTTT[CPEB2,CPEB4,TIAR1,TIAR3]
  • ATGCACA[CPO,MEC8,SNRPA]
  • TTGCACA[CSCAFFOLD4000008,SNRPA]
  • ACAGTTG[DAZ3]
  • GTTTTTT[DAZ3]
  • CAAGTTA[DAZ3]
  • GTTTAAA[DAZ3]
  • GTTCCGT[DAZ3]
  • GTTCTAG[DAZ3]
  • TAGTATA[DAZAP1,MSI1]
  • ATAGATA[DAZAP1]
  • TAAGTTA[DAZAP1]
  • TAGGTAG[DAZAP1]
  • TTTTTTT[EGW103003671,ELAVL1,GW184451,HNRNPC,HNRNPCL1,PUF60,SXL,TVAG514790]
  • AGAACAA[EGW109003261]
  • AGCATGC[EIF2ALPHA]
  • GTTGGAA[EIF4B]
  • GCGGGAC[EIF4B]
  • CGTTGCA[EIF4G2]
  • GCGAGGG[EIF4G2]
  • CGCCGTC[EIF4G2]
  • CCGCGGC[EIF4G2]
  • TTTGTTT[ELAV,ELAVL1,ZC3H14CONSTRUCT]
  • TTGGTTT[ELAVL1]
  • TTTATTT[ELAVL4,FUBP1,RBM15B,TIA1]
  • TATTATT[ELAVL4]
  • TTAAGTT[ELAVL4,EXC7]
  • CAGACAG[ENOX1]
  • GTGTGTG[ENSDARG00000058818,RBM24,RBM38]
  • CCAAATT[ENSGALG00000000814]
  • GTAATTG[ENSGALG00000003765]
  • GATGATT[ENSGALG00000014267,ENSXETG00000012802]
  • AAAAAAG[ENSXETG00000007102,NAB2CONSTRUCT]
  • CAAAAAG[ENSXETG00000018075]
  • GGGGTGG[ESRP1,RBM25]
  • GGTGGTG[ESRP1]
  • GGGGGAA[ESRP1]
  • TGGGGAT[ESRP2]
  • AATTTTG[ESTEXTFGENESHHS]
  • TTTGTGT[ETR1]
  • GGGTGGG[EWSR1,PUM1]
  • GTATAGG[EWSR1]
  • TGGGGTG[EWSR1]
  • GGCAGGG[EWSR1]
  • ACGGACA[FMR1]
  • GGACAAG[FMR1]
  • TTTAGTT[FNE]
  • TATGTAT[FUBP1]
  • TTATTAT[FUBP1,FUBP3]
  • TGTGTTT[FUBP1]
  • TATATAT[FUBP3]
  • GGTGGCG[FUS]
  • TGCGCGC[FUSCONSTRUCT]
  • AGAGAAA[FUSIP1]
  • AGAGAGG[FUSIP1]
  • GGACGGG[FXR2]
  • AGGATGA[G3BP2]
  • TGTTTTT[GW121961CONSTRUC]
  • TTATAGC[HNRNPA0]
  • TAGTTAG[HNRNPA0,MSI1]
  • CATTAGG[HNRNPA0]
  • TAGCTTA[HNRNPA0]
  • TTAGGGA[HNRNPA1,HNRNPA1L2,HNRNPA2B1]
  • GGGGAGG[HNRNPA2B1]
  • GGGGGTA[HNRNPA2B1]
  • TAGATAG[HNRNPAB,UNK]
  • CATTTTT[HNRNPC,RALYL]
  • CTTTTTA[HNRNPCL1]
  • ATAGTAA[HNRNPD]
  • TAATTAA[HNRNPDL]
  • TAATATT[HNRNPDL]
  • GGGAGGG[HNRNPF,HNRNPH2,ILF2]
  • AGGGAGG[HNRNPF]
  • AGGGGTA[HNRNPF]
  • GGGGGAG[HNRNPH2,SRSF8]
  • AGGGGGT[HNRNPH2]
  • CAGCCCA[HNRNPK]
  • CACGCAC[HNRNPK]
  • CGTGTCC[HNRNPK]
  • CACCACC[HNRNPK]
  • CCAACCC[HNRNPK]
  • ACATACA[HNRNPL]
  • CATTACA[HNRNPL]
  • ACACAAA[HNRNPL]
  • ACTAACA[HOW,QKI,SF1CONSTRUCT]
  • TAGGTTA[HRB27C]
  • GGTAGGG[HRB87F,HRB98DE]
  • TATGTAG[HRP1]
  • CAATACA[IGF2BP1,IGF2BP2]
  • ACTCCCC[IGF2BP1]
  • CACATCA[IGF2BP1,IGF2BP2]
  • ACAAACA[IGF2BP2,IGF2BP3]
  • CTCCCCA[IGF2BP2]
  • GGGGTAG[ILF2]
  • ATGGTGG[ILF2]
  • TAAAAGG[KHDRBS1]
  • ATAAAAG[KHDRBS1]
  • AAATTAA[KHDRBS2]
  • TTATAAA[KHDRBS2,RBMS2]
  • CACTAAA[KHDRBS2]
  • GATAAAA[KHDRBS2]
  • TATTTAA[KHDRBS3,RBMS3]
  • AAATAAA[KHDRBS3]
  • GCGCGCG[KHDRBS3,PPRC1,RBM4B,RBM8A]
  • CCTTAAA[KHDRBS3]
  • ATGTATA[KHSRP]
  • TGTTATT[KHSRP]
  • TCGCGCG[LARK]
  • CGGAGAA[LIN28A]
  • CGGAGGA[LIN28A]
  • ACATTTT[LMJF180180]
  • TTACACG[LMJF320750]
  • AGAACGA[LMJF352550]
  • AAAAAAA[LMJF354130,PABPC4]
  • ATACATG[MAL8P140]
  • ATTACAC[MAL13P135]
  • AATCTTG[MATR3]
  • GCTTGCT[MBNL1]
  • CGCTGCT[MBNL1]
  • GCTTAGC[MBNL1]
  • CGCGCAA[MBNL1]
  • AGCTTGC[MBNL1]
  • AGTGGAA[MOD]
  • AGTAGGT[MSI]
  • AGTAGGG[MSI]
  • TAGATTT[MSI1]
  • AGTAGTT[MSICONSTRUCT]
  • AACCCTA[MUBCONSTRUCT]
  • GGAGGAA[NCU02404,SRSF1]
  • CATTCAT[NOVA1]
  • CATATCA[NOVA1]
  • CATAAAC[NOVA1]
  • TCACCAT[NOVA1]
  • AAAAATA[NUPL2,PABPN1L]
  • AAAGGAA[NUPL2]
  • CCGGCAC[NUPL2]
  • GAGACAA[NUPL2]
  • ACACCCA[NUPL2]
  • CAATAAG[NUPL2]
  • GTTGAAG[NUPL2]
  • GTTTGGG[ORB2]
  • GAAAATC[PABP]
  • AGAAAAA[PABPC1,SART3,TBG97295210,TVAG002940]
  • ACTAATA[PABPC1,SF1]
  • ACTAATC[PABPC1]
  • GAAAACC[PABPC3]
  • AGAAAAT[PABPC5]
  • AGAAGAC[PABPN1]
  • AAAATAT[PABPN1L]
  • CCGCCCC[PCBP1]
  • CCGGTCG[PCBP1,PCBP2,PCBP4]
  • CCCTTCC[PCBP1]
  • AAGCCCA[PCBP1]
  • CCTTTCC[PCBP1]
  • CCCGCCC[PCBP2]
  • CCTTCCC[PCBP2,PCBP4]
  • ACCCCAC[PCBP2]
  • AAGCCCC[PCBP2]
  • CTTTCCC[PCBP2]
  • CAATCCT[PCBP4]
  • ATTCCGA[PF100214]
  • TTACATG[PF130315]
  • ACTAAAC[PFF0320C]
  • TTTTTTG[PFI1435W,RALY,TIA1]
  • ATTAGCG[PRR3]
  • ATATAAG[PRR3]
  • AATGAAC[PRR3]
  • CTTTTCT[PTBP1]
  • ACTTTCT[PTBP1]
  • TCTTTCT[PTBP3]
  • CTATTCT[PTBP3]
  • TTTCTCT[PUF60]
  • TATGAGG[PUF68]
  • TGTACAG[PUM]
  • TGTAAAT[PUM]
  • TGTAATT[PUM]
  • TGTATAT[PUM1]
  • TACTAAC[QKI]
  • ATAATAA[QKR58E1]
  • TTTCTTT[RALYL]
  • GATACGA[RBM3]
  • GCGCGTA[RBM4]
  • GCTACGT[RBM4]
  • GCATGCG[RBM4,SFPQ]
  • GCGCGGG[RBM4]
  • GGGTCGG[RBM4B]
  • GCGGGGA[RBM4B]
  • GCGGTAC[RBM4B]
  • GAAGGAA[RBM5]
  • GAAGGAG[RBM5]
  • CGTCCCT[RBM6]
  • CCTATCC[RBM6]
  • GTCCACT[RBM6]
  • CACCCCC[RBM6]
  • AATCCAG[RBM6]
  • TTTAATT[RBM15B]
  • ACTTTTT[RBM15B]
  • TTACCGG[RBM22]
  • CCTCCCC[RBM23]
  • GCTTAAC[RBM23]
  • GCTTTTC[RBM24]
  • GGGGGCA[RBM25]
  • GGCTGGG[RBM25]
  • GAGTAGA[RBM28]
  • TTACTTT[RBM41]
  • CTACATA[RBM41]
  • ATACATT[RBM41]
  • ACGCAAC[RBM45]
  • ACATTAC[RBM45]
  • ACTAACG[RBM45]
  • GACACCC[RBM45]
  • ACGTACA[RBM45]
  • ACGACGA[RBM45,RSF1]
  • GACGACA[RBM45]
  • AATCAAT[RBM46]
  • TAATCAA[RBM47]
  • AAATTAT[RBM47]
  • TATATAC[RBMS1]
  • GTATATC[RBMS2]
  • CTATTTA[RBMS2]
  • AATATAT[RBMS3]
  • TTATAAT[RBMS3]
  • ATACATA[RBMS3]
  • TATATAG[RBMS3]
  • ACAACGA[RBP1]
  • ATCAACG[RBP1LIKE]
  • TTTGGTT[RBP9]
  • TATATTA[RC3H1,SHEP]
  • CCTATGG[RC3H1]
  • TCTGTGA[RC3H1]
  • CACATTG[RC3H1]
  • AGAAGGC[REF2]
  • AGAGAAG[RNP4F]
  • AGGGGAA[RO3G00049]
  • CCATTTT[ROX8]
  • GCTGGAC[SAMD4A]
  • ATTAACA[SF1]
  • ATAACCC[SF1]
  • AGGAGGA[SF2]
  • TCAAAAG[SF3B4]
  • TGTAAGT[SFPQ]
  • ATAGTGT[SFPQ]
  • GCCCGGG[SFPQ]
  • CGGGGCC[SFPQ]
  • AGTAATG[SFPQ]
  • GTAGTGT[SFPQ]
  • ATATTAA[SHEP]
  • ATATTTA[SHEP,SUP26CONSTRUCT]
  • GATCAAG[SNRNP70]
  • CAGCACG[SNRPA]
  • ATTGCAC[SNRPA]
  • AGGAGAT[SNRPA]
  • GTAGGTA[SRP54]
  • GGAGGAC[SRSF1]
  • GGAGGAG[SRSF1]
  • ACGCGCA[SRSF1]
  • AGCAGCA[SRSF2,SRSF5,SRSF10]
  • GTTCCAG[SRSF2]
  • CGCGCAG[SRSF2]
  • AGGAGAG[SRSF2]
  • AGCAGTT[SRSF4]
  • TGCTGCT[SRSF4]
  • GGTGTGC[SRSF4]
  • CCCCTCA[SRSF5]
  • CGCCACC[SRSF5]
  • GCGCGCC[SRSF5]
  • CACCGCC[SRSF5]
  • GCAGCAG[SRSF8]
  • AAGGAGG[SRSF9]
  • AGGGAAA[SRSF9]
  • TAGAACA[SRSF9]
  • GGAAGGA[SRSF9]
  • AGGAGCA[SRSF9]
  • GCATGCA[SRSF10]
  • AAGCAGC[SRSF11]
  • AGAGAGA[SRSF11]
  • CGATACT[STARPAP]
  • TGTGTGA[SUP12]
  • GGGGGGG[TAF15]
  • GCCCCCC[TAF15]
  • GCGCGCA[TAF15]
  • AGTATGT[TARDBP]
  • TGAGTGG[TARDBP]
  • CATTGTA[TBG97234300]
  • CTGTTGT[TBG97262300]
  • CTTTCTT[TBG97294840]
  • ATTCACA[TBG972111000]
  • AGTAGAT[TBG9721117950CONS]
  • AACACGC[THAPSDRAFT1841]
  • TTTTATT[TIA1]
  • TTTTTTC[TIA1,U2AF2,U2AF50]
  • GAAGAAG[TRA2]
  • AAGAAGA[TRA2A]
  • CCTGAAA[TRA2A]
  • TATTTTT[TRNAU1AP]
  • ATTTTTA[TRNAU1AP]
  • TTAAATT[TRNAU1AP]
  • ACCATGA[TVAG267990]
  • TGTTGTG[UNC75]
  • TAGTTTA[UNK]
  • AATTAGC[UNK]
  • TAGTAAT[UNK]
  • AACATCA[YB1]
  • AACAACA[YBX2]
  • GCAGCGC[ZC3H10]
  • GTATTAA[ZCRB1]
  • CGCTTAA[ZCRB1]
  • TATTTAT[ZFP36]
  • GGATGTC[ZNF326]
  • GAATTCC[ZNF326]
  • GGATCGT[ZNF326]
  • GGACACG[ZNF326]
  • TGTTCGT[ZNF638]