Six polytract files are provided for each of 11 reference genomes. Users can download the six files for one or multiple genomes of their choice. These polytract files must be placed at polytrap/tracts/.

Human
hg38	MNR	tracts/polytract_hg38_single.csv.gz
hg38	DNR	tracts/polytract_hg38_di.csv.gz
hg38	TNR	tracts/polytract_hg38_tri.csv.gz
hg38	hinge	tracts/polytract_breaks_hg38_1.csv.gz
hg38	hinge	tracts/polytract_breaks_hg38_3.csv.gz
hg38	hinge	tracts/polytract_breaks_hg38_2.csv.gz
Human
hg19	MNR	tracts/polytract_hg19_single.csv.gz
hg19	DNR	tracts/polytract_hg19_di.csv.gz
hg19	TNR	tracts/polytract_hg19_tri.csv.gz
hg19	hinge	tracts/polytract_breaks_hg19_3.csv.gz
hg19	hinge	tracts/polytract_breaks_hg19_2.csv.gz
hg19	hinge	tracts/polytract_breaks_hg19_1.csv.gz
Mouse
mm10	MNR	tracts/polytract_mm10_single.csv.gz
mm10	DNR	tracts/polytract_mm10_di.csv.gz
mm10	TNR	tracts/polytract_mm10_tri.csv.gz
mm10	hinge	tracts/polytract_breaks_mm10_2.csv.gz
mm10	hinge	tracts/polytract_breaks_mm10_1.csv.gz
mm10	hinge	tracts/polytract_breaks_mm10_3.csv.gz
Mouse
mm9	MNR	tracts/polytract_mm9_single.csv.gz
mm9	DNR	tracts/polytract_mm9_di.csv.gz
mm9	TNR	tracts/polytract_mm9_tri.csv.gz
mm9	hinge	tracts/polytract_breaks_mm9_3.csv.gz
mm9	hinge	tracts/polytract_breaks_mm9_2.csv.gz
mm9	hinge	tracts/polytract_breaks_mm9_1.csv.gz
Dog
canfam3	MNR	tracts/polytract_canfam3_single.csv.gz
canfam3	DNR	tracts/polytract_canfam3_di.csv.gz
canfam3	TNR	tracts/polytract_canfam3_tri.csv.gz
canfam3	hinge	tracts/polytract_breaks_canfam3_3.csv.gz
canfam3	hinge	tracts/polytract_breaks_canfam3_2.csv.gz
canfam3	hinge	tracts/polytract_breaks_canfam3_1.csv.gz
Zebrafish
danrer10	MNR	tracts/polytract_danrer10_single.csv.gz
danrer10	DNR	tracts/polytract_danrer10_di.csv.gz
danrer10	TNR	tracts/polytract_danrer10_tri.csv.gz
danrer10	hinge	tracts/polytract_breaks_danrer10_3.csv.gz
danrer10	hinge	tracts/polytract_breaks_danrer10_2.csv.gz
danrer10	hinge	tracts/polytract_breaks_danrer10_1.csv.gz
Fruitfly
dm6	MNR	tracts/polytract_dm6_single.csv.gz
dm6	DNR	tracts/polytract_dm6_di.csv.gz
dm6	TNR	tracts/polytract_dm6_tri.csv.gz
dm6	hinge	tracts/polytract_breaks_dm6_1.csv.gz
dm6	hinge	tracts/polytract_breaks_dm6_2.csv.gz
dm6	hinge	tracts/polytract_breaks_dm6_3.csv.gz
Chicken
galgal5	MNR	tracts/polytract_galgal5_single.csv.gz
galgal5	DNR	tracts/polytract_galgal5_di.csv.gz
galgal5	TNR	tracts/polytract_galgal5_tri.csv.gz
galgal5	hinge	tracts/polytract_breaks_galgal5_3.csv.gz
galgal5	hinge	tracts/polytract_breaks_galgal5_2.csv.gz
galgal5	hinge	tracts/polytract_breaks_galgal5_1.csv.gz
Macaque
rhemac8	MNR	tracts/polytract_rhemac8_single.csv.gz
rhemac8	DNR	tracts/polytract_rhemac8_di.csv.gz
rhemac8	TNR	tracts/polytract_rhemac8_tri.csv.gz
rhemac8	hinge	tracts/polytract_breaks_rhemac8_1.csv.gz
rhemac8	hinge	tracts/polytract_breaks_rhemac8_3.csv.gz
rhemac8	hinge	tracts/polytract_breaks_rhemac8_2.csv.gz
Rat
rn6	MNR	tracts/polytract_rn6_single.csv.gz
rn6	DNR	tracts/polytract_rn6_di.csv.gz
rn6	TNR	tracts/polytract_rn6_tri.csv.gz
rn6	hinge	tracts/polytract_breaks_rn6_2.csv.gz
rn6	hinge	tracts/polytract_breaks_rn6_3.csv.gz
rn6	hinge	tracts/polytract_breaks_rn6_1.csv.gz
Yeast
saccer3	MNR	tracts/polytract_saccer3_single.csv.gz
saccer3	DNR	tracts/polytract_saccer3_di.csv.gz
saccer3	TNR	tracts/polytract_saccer3_tri.csv.gz
saccer3	hinge	tracts/polytract_breaks_saccer3_1.csv.gz
saccer3	hinge	tracts/polytract_breaks_saccer3_3.csv.gz
saccer3	hinge	tracts/polytract_breaks_saccer3_2.csv.gz

Repeat BED files for CPDSeqer protocol

tracts/MNR_saccer3.bed.gz

tracts/MNR_hg38.bed.gz

tracts/MNR_hg19.bed.gz

tracts/DNR_saccer3.bed.gz

tracts/DNR_hg38.bed.gz

tracts/DNR_hg19.bed.gz